Setting up Galaxy
Documentation is in http://wiki.lappsgrid.org/technical/galaxy.html.
This uses scripts in installation and setup scripts. Which has a bunch of ubuntu style setup scripts.
There are two repos with Galaxy code:
- We have a fork https://github.com/lappsgrid-incubator/Galaxy of https://github.com/galaxyproject/galaxy with some lapps specific modifications
- The LAPPS Grid modifications to core Galaxy are in the GalaxyMods repository
In addition, there are Galaxy webhooks for extending the Galaxy client without changing the Galaxy code base at https://docs.galaxyproject.org/en/latest/admin/webhooks.html
Planemo
Visualization
- https://wiki.galaxyproject.org/Develop/Visualizations
- find chunqi paper