Miscelleneous
Federation
No documentation available. We first need to get everything on the latest service manager.
Creating a lappsgrid with galaxy-appliances
- A system for configuring a network of LAPPS Grid Docker images
- https://github.com/lappsgrid-incubator/galaxy-appliance
Using ansible
Like bash scripts but more portable.
https://github.com/lappsgrid-incubator/lapps-container
This is an in-progress pipe dream.
Conda and the Galaxy toolshed
We are not using those excapt tht we have one tool on the toolshed to prove we can do it.
Using Jupyter
- https://github.com/lappsgrid-incubator/jupyter-groovy-kernel
- https://github.com/lappsgrid-incubator/jupyter-lsd-kernel
LDDL and LSD
Both are Groovy DSLs.
LSD - Lapps Services DSL, a DSL for invoking LAPPS web services (possibly pipelined).
The code base for LSD is at https://github.com/lappsgrid-incubator/org.anc.lapps.dsl
LDDL - LAPPS Database Definition Language
Configuration scripts for the LAPPS grid at https://github.com/lappsgrid-incubator/org.anc.lapps.lddl
LDDL scripts at https://github.com/lappsgrid-incubator/lddl-scripts
http://www.lappsgrid.org/software/ has some notes on LDDL and LSD
Description of LDDL: http://www.lappsgrid.org/software/lddl/
There is an outdated wiki at https://github.com/ksuderman/lsd-scripts/wiki
Repositories
Where are all the repositories, what do they do and what is their role in the bigger picture?
-
The LAPPS Grid incubator organization at https://github.com/lappsgrid-incubator
-
The LAPPS organization at https://github.com/lapps
-
The Galaxy NLP organization at https://github.com/galaxy-nlp
- The Brandeis NLP organization at https://github.com/brandeis-nlp
- code for wrappers created at Brandeis
- The OANC organization at https://github.com/oanc
- code for wrappers created at Vassar